- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.570:Extracellular Endonuclease; Chain A
- Homology: 3.40.570.10:Extracellular Endonuclease, subunit A
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1g8t | [A2] | [A2] | [A2] | 1.1 | MG:MAGNESIUM ION SO4:SULFATE ION | |||
1qae | [A2] | [A2] | [A2] | 2.05 | MG:MAGNESIUM ION | |||
1ql0 | [A2] | [A2] | [A2] | 1.1 | MG:MAGNESIUM ION | |||
1smn | [A2] | [A2] | [A2] | 2.04 | ||||
1zm8 | [A] | [A] | [A] | 1.9 | MN:MANGANESE (II) ION NA:SODIUM ION SO4:SULFATE ION | |||
2o3b | [AB] | [AB] | [AB] | 2.3 | MES:2-(N-MORPHOLINO)-ETHANESULFONIC ACID MG:MAGNESIUM ION NI:NICKEL (II) ION | |||
2xgr | [A] | [A] | [A] | 1.7 | PEG:DI(HYDROXYETHYL)ETHER | |||
2xh3 | [A] | [A] | [A] | 2.49 | PEG:DI(HYDROXYETHYL)ETHER | |||
2xr9 | [A] | [A] | [A] | 2.05 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION IOD:IODIDE ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PO4:PHOSPHATE ION SCN:THIOCYANATE ION ZN:ZINC ION | |||
2xrg | [A] | [A] | [A] | 3.2 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION IOD:IODIDE ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SWH:{4-[(4-{(Z)-[3-(4-FLUOROBENZYL)-2,4-DIOXO-1,3-THIAZOLIDIN-5-YLIDENE]METHYL}PHENOXY)METHYL]PHENYL}(TRIHYDROXY)BORATE(1-) ZN:ZINC ION | |||
3ism | [A2B] | [A2B] | [A2B] | 2.2 | MG:MAGNESIUM ION TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | |||
3nkm | [A] | [A] | [A] | 2 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKP:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL (9E)-OCTADEC-9-ENOATE SCN:THIOCYANATE ION SO4:SULFATE ION ZN:ZINC ION | |||
3nkn | [A] | [A] | [A] | 1.8 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKN:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL TETRADECANOATE SCN:THIOCYANATE ION ZN:ZINC ION | |||
3nko | [A] | [A] | [A] | 1.75 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKO:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL HEXADECANOATE SCN:THIOCYANATE ION ZN:ZINC ION | |||
3nkp | [A] | [A] | [A] | 1.75 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKP:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL (9E)-OCTADEC-9-ENOATE SCN:THIOCYANATE ION ZN:ZINC ION | |||
3nkq | [A] | [A] | [A] | 1.7 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKQ:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL (9E,12Z,15Z)-OCTADECA-9,12,15-TRIENOATE SCN:THIOCYANATE ION ZN:ZINC ION | |||
3nkr | [A] | [A] | [A] | 1.7 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKR:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL (4Z,7E,10E,13Z,16Z,19Z)-DOCOSA-4,7,10,13,16,19-HEXAENOATE SCN:THIOCYANATE ION ZN:ZINC ION | |||
3owv | [A] | [A] | [A] | 1.75 | CL:CHLORIDE ION MG:MAGNESIUM ION | |||
3s5b | [A2] | [A2] | [A2] | 1.8 | MG:MAGNESIUM ION | |||
3wav | [A] | [A] | [A] | 1.8 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION DWV:(5Z)-5-(3,4-DICHLOROBENZYLIDENE)-2-(4-METHYLPIPERAZIN-1-YL)-1,3-THIAZOL-4(5H)-ONE EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SCN:THIOCYANATE ION SO4:SULFATE ION ZN:ZINC ION | |||
3waw | [A] | [A] | [A] | 1.95 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION DWW:[2-({4-[(5Z)-5-(3,4-DICHLOROBENZYLIDENE)-4-OXO-4,5-DIHYDRO-1,3-THIAZOL-2-YL]PIPERAZIN-1-YL}METHYL)PHENYL]BORONIC ACID EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SCN:THIOCYANATE ION SO4:SULFATE ION ZN:ZINC ION | |||
3wax | [A] | [A] | [A] | 1.9 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION DWX:[3-({4-[(5Z)-5-(3,4-DICHLOROBENZYLIDENE)-4-OXO-4,5-DIHYDRO-1,3-THIAZOL-2-YL]PIPERAZIN-1-YL}METHYL)PHENYL]BORONIC ACID EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SCN:THIOCYANATE ION ZN:ZINC ION | |||
3way | [A] | [A] | [A] | 1.75 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION DWY:[4-({4-[(5Z)-5-(3,4-DICHLOROBENZYLIDENE)-4-OXO-4,5-DIHYDRO-1,3-THIAZOL-2-YL]PIPERAZIN-1-YL}METHYL)PHENYL]BORONIC ACID EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SCN:THIOCYANATE ION ZN:ZINC ION | |||
4a1n | [A2] | [A2] | [A2] | 2.8 | CL:CHLORIDE ION MG:MAGNESIUM ION NA:SODIUM ION | |||
4b56 | [A2] | [A2] | [A2] | 3 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PO4:PHOSPHATE ION ZN:ZINC ION | |||
4e3y | [A] | [A] | [A] | 0.95 | EDO:1,2-ETHANEDIOL GOL:GLYCEROL MG:MAGNESIUM ION PEG:DI(HYDROXYETHYL)ETHER SO4:SULFATE ION | |||
4gtw | [A] | [A] | [A] | 2.7 | AMP:ADENOSINE MONOPHOSPHATE BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION MAN:ALPHA-D-MANNOPYRANOSE MSE:SELENOMETHIONINE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4gtx | [A] | [A] | [A] | 3.2 | BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE TMP:THYMIDINE-5___sq___-PHOSPHATE ZN:ZINC ION | |||
4gty | [A] | [A] | [A] | 3.19 | 5GP:GUANOSINE-5___sq___-MONOPHOSPHATE BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4gtz | [A] | [A] | [A] | 3.19 | BMA:BETA-D-MANNOPYRANOSE C5P:CYTIDINE-5___sq___-MONOPHOSPHATE CA:CALCIUM ION MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4qgo | [A] | [A] | [A] | 1.5 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL SO4:SULFATE ION | |||
4qh0 | [A] | [A] | [A] | 2 | CL:CHLORIDE ION EDO:1,2-ETHANEDIOL MG:MAGNESIUM ION SO4:SULFATE ION | |||
4qn0 | [A2] | [A2] | [A2] | 2.74 | MG:MAGNESIUM ION | |||
4zg6 | [A] | [A] | [A] | 1.8 | 4NY:4-{(Z)-2-[6-CHLORO-1-(4-FLUOROBENZYL)-1H-INDOL-3-YL]-1-CYANOETHENYL}BENZOIC ACID BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION GOL:GLYCEROL NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SCN:THIOCYANATE ION ZN:ZINC ION | |||
4zg7 | [A] | [A] | [A] | 1.75 | 4O0:3-({6-CHLORO-7-FLUORO-2-METHYL-1-[2-OXO-2-(SPIRO[CYCLOPROPANE-1,3___sq___-INDOL]-1___sq___(2___sq___H)-YL)ETHYL]-1H-INDOL-3-YL}SULFANYL)-2-FLUOROBENZOIC ACID CA:CALCIUM ION CL:CHLORIDE ION GOL:GLYCEROL NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKN:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL TETRADECANOATE ZN:ZINC ION | |||
4zg9 | [A] | [A] | [A] | 2.95 | 4O2:3-[(11AS)-6-(4-FLUOROBENZYL)-1,3-DIOXO-5,6,11,11A-TETRAHYDRO-1H-IMIDAZO[1___sq___,5___sq___:1,6]PYRIDO[3,4-B]INDOL-2(3H)-YL]PROPANOIC ACID BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
4zga | [A] | [A] | [A] | 2.6 | 4O3:(11AS)-6-(4-FLUOROBENZYL)-5,6,11,11A-TETRAHYDRO-1H-IMIDAZO[1___sq___,5___sq___:1,6]PYRIDO[3,4-B]INDOLE-1,3(2H)-DIONE ACD:ARACHIDONIC ACID CA:CALCIUM ION EDO:1,2-ETHANEDIOL NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SCN:THIOCYANATE ION ZN:ZINC ION | |||
5dlt | [A] | [A] | [A] | 1.6 | 5JK:7ALPHA-HYDROXYCHOLESTEROL BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION GOL:GLYCEROL IOD:IODIDE ION NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SCN:THIOCYANATE ION TPO:PHOSPHOTHREONINE ZN:ZINC ION | |||
5dlv | [A] | [A] | [A] | 2 | 5D5:2-{[(3ALPHA,5BETA,7ALPHA,8ALPHA,14BETA,17ALPHA)-3,7-DIHYDROXY-24-OXOCHOLAN-24-YL]AMINO}ETHANESULFONIC ACID BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION GOL:GLYCEROL IOD:IODIDE ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PO4:PHOSPHATE ION SCN:THIOCYANATE ION ZN:ZINC ION | |||
5dlw | [A] | [A] | [A] | 1.8 | 5D5:2-{[(3ALPHA,5BETA,7ALPHA,8ALPHA,14BETA,17ALPHA)-3,7-DIHYDROXY-24-OXOCHOLAN-24-YL]AMINO}ETHANESULFONIC ACID BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION GOL:GLYCEROL IOD:IODIDE ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE NKP:(2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL (9E)-OCTADEC-9-ENOATE SCN:THIOCYANATE ION ZN:ZINC ION | |||
5gkc | [A2] | [A2] | [A2] | 1.89 | ||||
5gkp | [A2](A2) | [A2](A2) | [A2](A2) | 2.3 | MG:MAGNESIUM ION | |||
5hrt | [A](A) | [A](A) | [A](A) | 2 | A2M:2___sq___-O-METHYLADENOSINE 5___sq___-(DIHYDROGEN PHOSPHATE) BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION CL:CHLORIDE ION GOL:GLYCEROL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE OMC:O2___sq___-METHYLYCYTIDINE-5___sq___-MONOPHOSPHATE OMG:O2___sq___-METHYLGUANOSINE-5___sq___-MONOPHOSPHATE ZN:ZINC ION | |||
5ijq | [A] | [A] | [A] | 2.05 | 5JK:7ALPHA-HYDROXYCHOLESTEROL BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION GOL:GLYCEROL IOD:IODIDE ION NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PO4:PHOSPHATE ION SCN:THIOCYANATE ION ZN:ZINC ION | |||
5ijs | [A] | [A] | [A] | 2.2 | 5JK:7ALPHA-HYDROXYCHOLESTEROL 6BR:THREONINEVANADATE CA:CALCIUM ION IOD:IODIDE ION NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
5inh | [A] | [A] | [A] | 1.84 | 6C1:{2-[(3-CHLOROPHENYL)METHOXY]PHENYL}BORONIC ACID ACT:ACETATE ION BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
5kxa | [A] | [A] | [A] | 2.59 | 6Y7:3-[6-CHLORANYL-2-CYCLOPROPYL-1-(1-ETHYLPYRAZOL-4-YL)-7-FLUORANYL-INDOL-3-YL]SULFANYL-2-FLUORANYL-BENZOIC ACID CA:CALCIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE PO4:PHOSPHATE ION ZN:ZINC ION | |||
5l0b | [A] | [A] | [A] | 2.41 | 6ZM:1-{2-[(2,3-DIHYDRO-1H-INDEN-2-YL)AMINO]-7,8-DIHYDROPYRIDO[4,3-D]PYRIMIDIN-6(5H)-YL}ETHAN-1-ONE BMA:BETA-D-MANNOPYRANOSE CL:CHLORIDE ION MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
5l0e | [A] | [A] | [A] | 3.06 | 6ZN:6-(3-{2-[(2,3-DIHYDRO-1H-INDEN-2-YL)AMINO]-7,8-DIHYDROPYRIDO[4,3-D]PYRIMIDIN-6(5H)-YL}PROPANOYL)-1,3-BENZOXAZOL-2(3H)-ONE BMA:BETA-D-MANNOPYRANOSE CL:CHLORIDE ION MAN:ALPHA-D-MANNOPYRANOSE NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
5l0k | [A] | [A] | [A] | 2.73 | 6ZO:(3,5-DICHLOROPHENYL)METHYL 4-[3-OXO-3-(2-OXO-2,3-DIHYDRO-1,3-BENZOXAZOL-6-YL)PROPYL]PIPERAZINE-1-CARBOXYLATE BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION CL:CHLORIDE ION EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION | |||
5lia | [A] | [A] | [A] | 1.92 | 6XN:~{N}-[(1~{S})-1-(4-CHLOROPHENYL)ETHYL]-3-[3-[[4-(TRIFLUOROMETHYLOXY)PHENYL]METHYL]IMIDAZO[4,5-B]PYRIDIN-2-YL]PROPANAMIDE BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION EDO:1,2-ETHANEDIOL K:POTASSIUM ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE SO4:SULFATE ION ZN:ZINC ION | |||
5lqq | [A] | [A] | [A] | 2.4 | 72P:3-(6-CHLORANYL-2-METHYL-1-PHENYL-INDOL-3-YL)SULFANYLBENZOIC ACID BMA:BETA-D-MANNOPYRANOSE CA:CALCIUM ION IOD:IODIDE ION MAN:ALPHA-D-MANNOPYRANOSE NA:SODIUM ION NAG:2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE ZN:ZINC ION |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA